Group A
 | | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | PAOK Salonika | 6 | 3 | 3 | 0 | 10 | 6 | 4 | 12 |
| 2 | Rubin Kazan | 6 | 3 | 2 | 1 | 11 | 5 | 6 | 11 |
| 3 | Tottenham | 6 | 3 | 1 | 2 | 9 | 4 | 5 | 10 |
| 4 | Shamrock Rovers | 6 | 0 | 0 | 6 | 4 | 19 | -15 | 0 |
Group B
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Standard Liege | 6 | 4 | 2 | 0 | 9 | 1 | 8 | 14 |
| 2 | Hannover 96 | 6 | 3 | 2 | 1 | 9 | 7 | 2 | 11 |
| 3 | FC Copenhagen | 6 | 1 | 2 | 3 | 5 | 9 | -4 | 5 |
| 4 | Vorskla | 6 | 0 | 2 | 4 | 4 | 10 | -6 | 2 |
Group C
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | PSV | 6 | 5 | 1 | 0 | 13 | 5 | 8 | 16 |
| 2 | Legia Warsaw | 6 | 3 | 0 | 3 | 7 | 9 | -2 | 9 |
| 3 | Hapoel Tel-Aviv | 6 | 2 | 1 | 3 | 10 | 9 | 1 | 7 |
| 4 | Rapid Bucuresti | 6 | 1 | 0 | 5 | 5 | 12 | -7 | 3 |
Group D
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Sporting | 6 | 4 | 0 | 2 | 8 | 4 | 4 | 12 |
| 2 | Lazio | 6 | 2 | 3 | 1 | 7 | 5 | 2 | 9 |
| 3 | FC Vaslui | 6 | 1 | 3 | 2 | 5 | 8 | -3 | 6 |
| 4 | FC Zurich | 6 | 1 | 2 | 3 | 5 | 8 | -3 | 5 |
Group E
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Besiktas | 6 | 4 | 0 | 2 | 13 | 7 | 6 | 12 |
| 2 | Stoke | 6 | 3 | 2 | 1 | 10 | 7 | 3 | 11 |
| 3 | Dynamo Kiev | 6 | 1 | 4 | 1 | 7 | 7 | 0 | 7 |
| 4 | Maccabi Tel-Aviv | 6 | 0 | 2 | 4 | 8 | 17 | -9 | 2 |
Group F
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Athletic Bilbao | 6 | 4 | 1 | 1 | 11 | 8 | 3 | 13 |
| 2 | SV Red Bull Salzburg | 6 | 3 | 1 | 2 | 11 | 8 | 3 | 10 |
| 3 | PSG | 6 | 3 | 1 | 2 | 8 | 7 | 1 | 10 |
| 4 | Slovan Bratislava | 6 | 0 | 1 | 5 | 4 | 11 | -7 | 1 |
Group G
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | FC Metalist Kharkiv | 6 | 4 | 2 | 0 | 15 | 6 | 9 | 14 |
| 2 | AZ | 6 | 1 | 5 | 0 | 10 | 7 | 3 | 8 |
| 3 | FK Austria Vienna | 6 | 2 | 2 | 2 | 10 | 11 | -1 | 8 |
| 4 | Malmo FF | 6 | 0 | 1 | 5 | 4 | 15 | -11 | 1 |
Group H
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Club Brugge | 6 | 3 | 2 | 1 | 12 | 9 | 3 | 11 |
| 2 | Braga | 6 | 3 | 2 | 1 | 12 | 6 | 6 | 11 |
| 3 | Birmingham | 6 | 3 | 1 | 2 | 8 | 8 | 0 | 10 |
| 4 | Maribor | 6 | 0 | 1 | 5 | 6 | 15 | -9 | 1 |
Group I
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Atletico Madrid | 6 | 4 | 1 | 1 | 11 | 4 | 7 | 13 |
| 2 | Udinese | 6 | 2 | 3 | 1 | 6 | 7 | -1 | 9 |
| 3 | Celtic | 6 | 1 | 3 | 2 | 6 | 7 | -1 | 6 |
| 4 | Rennes | 6 | 0 | 3 | 3 | 5 | 10 | -5 | 3 |
Group J
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Schalke 04 | 6 | 4 | 2 | 0 | 13 | 2 | 11 | 14 |
| 2 | Steaua Bucuresti | 6 | 2 | 2 | 2 | 9 | 11 | -2 | 8 |
| 3 | Maccabi Haifa | 6 | 2 | 0 | 4 | 10 | 12 | -2 | 6 |
| 4 | AEK | 6 | 1 | 2 | 3 | 4 | 11 | -7 | 5 |
Group K
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | FC Twente | 6 | 4 | 1 | 1 | 14 | 7 | 7 | 13 |
| 2 | Wisla Krakow | 6 | 3 | 0 | 3 | 8 | 13 | -5 | 9 |
| 3 | Fulham | 6 | 2 | 2 | 2 | 9 | 6 | 3 | 8 |
| 4 | Odense BK | 6 | 1 | 1 | 4 | 9 | 14 | -5 | 4 |
Group L
| | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Anderlecht | 6 | 6 | 0 | 0 | 18 | 5 | 13 | 18 |
| 2 | Lokomotiv Moscow | 6 | 4 | 0 | 2 | 14 | 11 | 3 | 12 |
| 3 | AEK Athens | 6 | 1 | 0 | 5 | 8 | 15 | -7 | 3 |
| 4 | SK Sturm Graz | 6 | 1 | 0 | 5 | 5 | 14 | -9 | 3 |
